Package: microxanox
Version: 0.9.3
Date: 2023-11-13
Title: Oxic-Anoxic Regime Shifts in Microbial Communities
Description: Model to simulate a three functional group system with
        four chemical substrates using a set of ordinary differential
        equations. Simulations can be run individually or over a
        parameter range, to find stable states. The model features
        multiple species per functional group, where the number is only
        limited by computational constraints. The R package is
        constructed in such a way, that the results contain the input
        parameter used, so that a saved results can be loaded again and
        thesimulation be repeated.
Authors@R: 
    c(person(given = "Owen L.",
             family = "Petchey",
             role = c("aut", "cre"),
             email = "Owen.Petchey@ieu.uzh.ch",
             comment = c(ORCID = "0000-0002-7724-1633")),
      person(given = "Rainer M.",
             family = "Krug",
             role = "ctb",
             email = "Rainer.Krug@uzh.ch",
             comment = c(ORCID = "0000-0002-7490-0066")),
      person(given = "Pascal",
             family = "Baertschi",
             role = "ctb",
             email = "compbio.baertschi@gmail.com",
             comment = c(ORCID = "0000-0002-6533-0399"))
      )
Maintainer: Owen L. Petchey <Owen.Petchey@ieu.uzh.ch>
URL: https://github.com/UZH-PEG/microxanox/
BugReports: https://github.com/UZH-PEG/microxanox/issues
License: MIT + file LICENSE
Depends: R (>= 4.1.0),
Imports: magrittr, tibble, ggplot2, patchwork, grDevices, stats, mgcv,
        deSolve, dplyr, tidyr, stringr, multidplyr, ggpubr, DescTools
Suggests: knitr, rmarkdown, rootSolve, tidyverse, testthat (>= 3.0.0),
        roxyglobals
RoxygenNote: 7.3.1
Encoding: UTF-8
VignetteBuilder: knitr
Config/testthat/edition: 3
Roxygen: list(roclets = c("collate", "namespace", "rd",
        "roxyglobals::global_roclet"))
Config/roxyglobals/filename: globals.R
Config/roxyglobals/unique: FALSE
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://uzh-peg.r-universe.dev
Date/Publication: 2024-03-06 13:23:32 UTC
RemoteUrl: https://github.com/UZH-PEG/microxanox
RemoteRef: HEAD
RemoteSha: 00e345f078d11f7e8c5322a1e496ffc8b7d40a9c
NeedsCompilation: no
Packaged: 2026-10-01 08:04:11 UTC; root
Author: Owen L. Petchey [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7724-1633>),
  Rainer M. Krug [ctb] (ORCID: <https://orcid.org/0000-0002-7490-0066>),
  Pascal Baertschi [ctb] (ORCID: <https://orcid.org/0000-0002-6533-0399>)