Package: microxanox 0.9.3
microxanox: Oxic-Anoxic Regime Shifts in Microbial Communities
Model to simulate a three functional group system with four chemical substrates using a set of ordinary differential equations. Simulations can be run individually or over a parameter range, to find stable states. The model features multiple species per functional group, where the number is only limited by computational constraints. The R package is constructed in such a way, that the results contain the input parameter used, so that a saved results can be loaded again and thesimulation be repeated.
Authors:
microxanox_0.9.3.tar.gz
microxanox_0.9.3.zip(r-4.5)microxanox_0.9.3.zip(r-4.4)microxanox_0.9.3.zip(r-4.3)
microxanox_0.9.3.tgz(r-4.4-any)microxanox_0.9.3.tgz(r-4.3-any)
microxanox_0.9.3.tar.gz(r-4.5-noble)microxanox_0.9.3.tar.gz(r-4.4-noble)
microxanox_0.9.3.tgz(r-4.4-emscripten)microxanox_0.9.3.tgz(r-4.3-emscripten)
microxanox.pdf |microxanox.html✨
microxanox/json (API)
NEWS
# Install 'microxanox' in R: |
install.packages('microxanox', repos = c('https://uzh-peg.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/uzh-peg/microxanox/issues
Last updated 8 months agofrom:00e345f078. Checks:OK: 3 NOTE: 4. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 12 2024 |
R-4.5-win | NOTE | Oct 12 2024 |
R-4.5-linux | NOTE | Oct 12 2024 |
R-4.4-win | NOTE | Oct 12 2024 |
R-4.4-mac | NOTE | Oct 12 2024 |
R-4.3-win | OK | Oct 12 2024 |
R-4.3-mac | OK | Oct 12 2024 |
Exports:add_strain_varbushplus_dynamic_modelevent_definition_1event_definition_2event_definition_symmetricget_final_states_a_Nget_hysteresis_maxget_hysteresis_minget_hysteresis_rangeget_hysteresis_totalget_nonlinearityget_ssbyaN_parameterget_stability_measuresget_stability_measures_replication_ssfind_resultget_stability_measures_temporal_ssfind_resultget_symmetry_measurementsgrowth1growth2inhibitionnew_CB_strain_parameternew_initial_statenew_PB_strain_parameternew_replication_ssfind_parameternew_replication_ssfind_resultsnew_runsim_parameternew_runsim_resultsnew_SB_strain_parameternew_strain_parameternew_temporal_ssfind_resultsplot_dynamicsplot_dynamics_symmetricplot_symmetry_measuresplot_temporal_ssplot_trajectory_symmetryplot_trajectory_symmetry_compactrun_replication_ssfindrun_simulationrun_simulation_symmetricrun_temporal_ssfindrun_temporal_ssfind_experimentrun_temporal_ssfind_symmetricset_diffusivitiesset_temporal_ssfind_initial_statesymmetric_bushplus_dynamic_model
Dependencies:abindaskpassbackportsBHbootbroomcallrcarcarDatacellrangerclassclicolorspacecorrplotcowplotcpp11crayoncurldata.tableDerivDescToolsdeSolvedoBydplyre1071ExactexpmfansifarverFormulagenericsggplot2ggpubrggrepelggsciggsignifgldgluegridExtragtablehmshttrisobandjsonlitelabelinglatticelifecyclelme4lmommagrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkmimeminqamodelrmultidplyrmunsellmvtnormnlmenloptrnnetnumDerivopensslpatchworkpbkrtestpillarpkgconfigpolynomprettyunitsprocessxprogressproxypspurrrqsquantregR6RApiSerializeRColorBrewerRcppRcppEigenRcppParallelreadxlrematchrlangrootSolverstatixrstudioapiscalesSparseMstringfishstringistringrsurvivalsystibbletidyrtidyselectutf8vctrsviridisLitewithr
SymSys User guide -- Extension of microxanox R Package for microbial oxic and anoxic, symmetric ecosystem simulations
Rendered fromSymSys-User-guide.Rmd
usingknitr::rmarkdown
on Oct 12 2024.Last update: 2024-03-06
Started: 2023-11-13
User guide -- microxanox R Package for microbial oxic and anoxic ecosystem simulations
Rendered fromUser-guide.Rmd
usingknitr::rmarkdown
on Oct 12 2024.Last update: 2023-11-13
Started: 2021-04-16