{
  "_id": "6a107393acfb0bcc41cac247",
  "Package": "dmdScheme",
  "Title": "Domain Specific MetaData Scheme",
  "Description": "Forms the core for developing own domain specific metadata\nschemes. It contains the basic functionality needed for all\nmetadata schemes based on the 'dmdScheme'. See R.M. Krug and\nO.L. Petchey (2019) <DOI:10.5281/zenodo.3581970>.",
  "Version": "1.3.5",
  "Date": "2022-08-22",
  "Authors@R": "c(person(given = \"Rainer M.\",\nfamily = \"Krug\",\nrole = c(\"aut\", \"cre\"),\nemail = \"Rainer.Krug@uzh.ch\",\ncomment = c(ORCID = \"0000-0002-7490-0066\")),\nperson(given = \"Owen L.\",\nfamily = \"Petchey\",\nrole = \"ctb\",\nemail = \"Owen.Petchey@uzh.ch\",\ncomment = c(ORCID = \"0000-0002-7724-1633\")))",
  "URL": "https://UZH-PEG.github.io/dmdScheme/,\nhttps://github.com/UZH-PEG/dmdScheme/",
  "BugReports": "https://github.com/UZH-PEG/dmdScheme/issues/",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "StagedInstall": "true",
  "RoxygenNote": "7.2.1",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libxml2-dev\nzlib1g-dev",
  "Repository": "https://uzh-peg.r-universe.dev",
  "Date/Publication": "2022-08-30 07:29:04 UTC",
  "RemoteUrl": "https://github.com/UZH-PEG/dmdScheme",
  "RemoteRef": "HEAD",
  "RemoteSha": "7441e6fbc8807aa6343a982c22b80dfae7d079bd",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-07 05:59:25 UTC",
    "User": "root"
  },
  "Author": "Rainer M. Krug [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7490-0066>),\nOwen L. Petchey [ctb] (ORCID: <https://orcid.org/0000-0002-7724-1633>)",
  "Maintainer": "Rainer M. Krug <Rainer.Krug@uzh.ch>",
  "MD5sum": "f8e185407612bc907e8329022efd002f",
  "_user": "uzh-peg",
  "_type": "src",
  "_file": "dmdScheme_1.3.5.tar.gz",
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  "_filesize": 4703479,
  "_sha256": "1369753c32c6f0eab6b4de9374a954d8c52a9c4ee7b3adb72c03a6764bbe0140",
  "_created": "2026-05-07T05:59:25.000Z",
  "_published": "2026-05-22T15:17:39.800Z",
  "_distro": "noble",
  "_jobs": [
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  "_buildurl": "https://github.com/r-universe/uzh-peg/actions/runs/25478514455",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/UZH-PEG/dmdScheme",
  "_commit": {
    "id": "7441e6fbc8807aa6343a982c22b80dfae7d079bd",
    "author": "Rainer M. Krug <Rainer@krugs.de>",
    "committer": "Rainer M. Krug <Rainer@krugs.de>",
    "message": "2.3.5 CRAN\n\nRemoved EML dependency and change of format of documentation as requested by CRAN.\n",
    "time": 1661844544
  },
  "_maintainer": {
    "name": "Rainer M. Krug",
    "email": "rainer.krug@uzh.ch",
    "orcid": "0000-0002-7490-0066"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "version": ">= 1.5",
      "role": "Imports"
    },
    {
      "package": "readxl",
      "version": ">= 1.2.0",
      "role": "Imports"
    },
    {
      "package": "xml2",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "version": ">= 0.3.1",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Imports"
    },
    {
      "package": "digest",
      "version": ">= 0.6",
      "role": "Imports"
    },
    {
      "package": "writexl",
      "role": "Imports"
    },
    {
      "package": "rappdirs",
      "role": "Imports"
    },
    {
      "package": "yaml",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "covr",
      "version": ">= 3.2.1",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 2.0.1",
      "role": "Suggests"
    },
    {
      "package": "here",
      "version": ">= 0.1",
      "role": "Suggests"
    },
    {
      "package": "shiny",
      "role": "Suggests"
    },
    {
      "package": "openxlsx",
      "role": "Suggests"
    },
    {
      "package": "xfun",
      "role": "Suggests"
    }
  ],
  "_owner": "uzh-peg",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "metadata-scheme"
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "rkrug",
      "count": 627,
      "uuid": 487172
    },
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      "uuid": 3215098
    },
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    }
  ],
  "_userbio": {
    "uuid": 22466731,
    "type": "organization",
    "name": "UZH-PEG"
  },
  "_downloads": {
    "count": 23,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/dmdScheme"
  },
  "_devurl": "https://github.com/uzh-peg/dmdscheme",
  "_pkgdown": "https://UZH-PEG.github.io/dmdScheme/",
  "_searchresults": 15,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/dmdScheme.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2020-01-10"
    },
    {
      "version": "1.1.0",
      "date": "2020-03-18"
    },
    {
      "version": "1.1.2",
      "date": "2020-04-30"
    },
    {
      "version": "1.1.3",
      "date": "2020-05-28"
    },
    {
      "version": "1.1.3.1",
      "date": "2020-05-29"
    },
    {
      "version": "1.2",
      "date": "2020-06-12"
    },
    {
      "version": "1.2.4",
      "date": "2020-09-14"
    },
    {
      "version": "1.2.6",
      "date": "2020-09-16"
    },
    {
      "version": "1.3.1",
      "date": "2022-03-23"
    },
    {
      "version": "1.3.2",
      "date": "2022-04-12"
    },
    {
      "version": "1.3.3",
      "date": "2022-04-12"
    },
    {
      "version": "1.3.5",
      "date": "2022-08-22"
    }
  ],
  "_exports": [
    "as_dmdScheme",
    "as_dmdScheme_raw",
    "as_eml",
    "as_xml",
    "as_xml_list",
    "cache",
    "dmdScheme",
    "dmdScheme_example",
    "dmdScheme_raw",
    "format_dmdScheme_xlsx",
    "lookup_tokens",
    "make_example",
    "make_index",
    "make_new_package",
    "new_dmdScheme_validation",
    "open_new_spreadsheet",
    "read_excel",
    "read_excel_raw",
    "read_xml",
    "report",
    "run_app",
    "scheme_active",
    "scheme_default",
    "scheme_download",
    "scheme_install",
    "scheme_install_r_package",
    "scheme_installed",
    "scheme_list",
    "scheme_list_in_repo",
    "scheme_make",
    "scheme_path_index_template",
    "scheme_path_xlsx",
    "scheme_path_xml",
    "scheme_repo",
    "scheme_uninstall",
    "scheme_use",
    "toTranspose",
    "upgrade_old_files",
    "valErr_extract",
    "valErr_info",
    "valErr_isOK",
    "valErr_TextErrCol",
    "validate",
    "validateAllowedValues",
    "validateDataFileMetaDataDataFileExists",
    "validateIDField",
    "validateStructure",
    "validateSuggestedValues",
    "validateTypes",
    "write_excel",
    "write_xml"
  ],
  "_help": [
    {
      "page": "as_dmdScheme",
      "title": "Generic function to convert the data stored in the object 'x' into a new object of class 'dmdScheme...'",
      "topics": [
        "as_dmdScheme",
        "as_dmdScheme.dmdSchemeData_raw",
        "as_dmdScheme.dmdSchemeSet_raw",
        "as_dmdScheme.xml_document"
      ]
    },
    {
      "page": "as_dmdScheme_raw",
      "title": "Generic function to convert the data stored in the object 'x' into a new object of class 'dmdScheme_raw...'",
      "topics": [
        "as_dmdScheme_raw",
        "as_dmdScheme_raw.dmdSchemeData",
        "as_dmdScheme_raw.dmdSchemeSet",
        "as_dmdScheme_raw.xml_document"
      ]
    },
    {
      "page": "as_eml",
      "title": "Generic function to convert an object to an object which can be saved as EML",
      "topics": [
        "as_eml",
        "as_eml.default"
      ]
    },
    {
      "page": "as_xml",
      "title": "Generic function to convert an object to xml",
      "topics": [
        "as_xml",
        "as_xml.dmdSchemeData",
        "as_xml.dmdSchemeSet"
      ]
    },
    {
      "page": "as_xml_list",
      "title": "Generic function to convert an object to a list containing xml(s)",
      "topics": [
        "as_xml_list",
        "as_xml_list.dmdSchemeSet"
      ]
    },
    {
      "page": "cache",
      "title": "Return cache directory",
      "topics": [
        "cache"
      ]
    },
    {
      "page": "cat_ln",
      "title": "cat with linefeed at the end Title",
      "topics": [
        "cat_ln"
      ]
    },
    {
      "page": "dmdScheme",
      "title": "Object of class 'dmdSchemeSet' containing the authorative definition of the dmdScheme.",
      "topics": [
        "dmdScheme",
        "dmdSchemeData",
        "dmdSchemeSet"
      ]
    },
    {
      "page": "dmdScheme_example",
      "title": "Object of class 'dmdSchemeSet' containing example data.",
      "topics": [
        "dmdScheme_example"
      ]
    },
    {
      "page": "dmdScheme_raw",
      "title": "Object of class 'dmdScheme_raw ' containing the raw data as read in.",
      "topics": [
        "dmdSchemeData_raw",
        "dmdSchemeSet_raw",
        "dmdScheme_raw"
      ]
    },
    {
      "page": "format_dmdScheme_xlsx",
      "title": "Format the metadata scheme file",
      "topics": [
        "format_dmdScheme_xlsx"
      ]
    },
    {
      "page": "lookup_tokens",
      "title": "Replace tokens with vlues from a dmdScheme",
      "topics": [
        "lookup_tokens"
      ]
    },
    {
      "page": "make_example",
      "title": "Create examples in working directory",
      "topics": [
        "make_example"
      ]
    },
    {
      "page": "make_index",
      "title": "Generic function to create the 'index.md' file to accompany the data deposit package",
      "topics": [
        "make_index",
        "make_index.dmdSchemeSet"
      ]
    },
    {
      "page": "make_new_package",
      "title": "Create anew package skelleton to add functiuonality to the currently active scheme.",
      "topics": [
        "make_new_package"
      ]
    },
    {
      "page": "new_dmdScheme_validation",
      "title": "Create new 'dmdScheme_validation' object",
      "topics": [
        "new_dmdScheme_validation"
      ]
    },
    {
      "page": "open_new_spreadsheet",
      "title": "Open the metadata scheme as a spreadsheet in a spreadsheet editor",
      "topics": [
        "open_new_spreadsheet"
      ]
    },
    {
      "page": "pkg.dmdScheme",
      "title": "dmdScheme: A package containing the framework for Domain specific MetaData Schemes",
      "topics": [
        "pkg.dmdScheme"
      ]
    },
    {
      "page": "print_dmdScheme_validation_details",
      "title": "Internal function to ptint dmdScheme_validation of format 'summary'",
      "topics": [
        "print_dmdScheme_validation_details"
      ]
    },
    {
      "page": "print_dmdScheme_validation_summary",
      "title": "Internal function to ptint dmdScheme_validation of format 'summary'",
      "topics": [
        "print_dmdScheme_validation_summary"
      ]
    },
    {
      "page": "print.dmdScheme_validation",
      "title": "Print method for 'dmdScheme_validation' object",
      "topics": [
        "print.dmdScheme_validation"
      ]
    },
    {
      "page": "print.dmdSchemeData",
      "title": "Print method for 'dmdSchemeData' object",
      "topics": [
        "print.dmdSchemeData"
      ]
    },
    {
      "page": "print.dmdSchemeSet",
      "title": "Print method for 'dmdSchemeSet' object",
      "topics": [
        "print.dmdSchemeSet"
      ]
    },
    {
      "page": "read_excel",
      "title": "Read scheme data from Excel file into 'dmdSchemeSet' object",
      "topics": [
        "read_excel"
      ]
    },
    {
      "page": "read_excel_raw",
      "title": "Read scheme data from Excel file into 'dmdScheme_raw' object",
      "topics": [
        "read_excel_raw"
      ]
    },
    {
      "page": "read_xml",
      "title": "Function to read x from an XML file",
      "topics": [
        "read_xml"
      ]
    },
    {
      "page": "report",
      "title": "Generic function for creating a report from an object 'x'",
      "topics": [
        "report",
        "report.character",
        "report.dmdScheme_validation"
      ]
    },
    {
      "page": "run_app",
      "title": "Run shiny app.",
      "topics": [
        "run_app"
      ]
    },
    {
      "page": "scheme",
      "title": "Functions to manage schemes",
      "topics": [
        "scheme_active",
        "scheme_default",
        "scheme_download",
        "scheme_install",
        "scheme_installed",
        "scheme_install_r_package",
        "scheme_list",
        "scheme_list_in_repo",
        "scheme_repo",
        "scheme_uninstall",
        "scheme_use"
      ]
    },
    {
      "page": "scheme_make",
      "title": "Functions to manage schemes",
      "topics": [
        "scheme_make"
      ]
    },
    {
      "page": "scheme_path_index_template",
      "title": "Functions to manage schemes",
      "topics": [
        "scheme_path_index_template"
      ]
    },
    {
      "page": "scheme_path_xlsx",
      "title": "Functions to manage schemes",
      "topics": [
        "scheme_path_xlsx"
      ]
    },
    {
      "page": "scheme_path_xml",
      "title": "Functions to manage schemes",
      "topics": [
        "scheme_path_xml"
      ]
    },
    {
      "page": "toTranspose",
      "title": "Return tabs in scheme definition in Excel document which need to be transposed or if a tab has to be transposed",
      "topics": [
        "toTranspose"
      ]
    },
    {
      "page": "upgrade_old_files",
      "title": "Convert older scheme versions of files to newer newer versions",
      "topics": [
        "upgrade_old_files"
      ]
    },
    {
      "page": "valErr_extract",
      "title": "Extract all fields named error of class 'dmdScheme_validation'",
      "topics": [
        "valErr_extract"
      ]
    },
    {
      "page": "valErr_info",
      "title": "Return info about error representation",
      "topics": [
        "valErr_info"
      ]
    },
    {
      "page": "valErr_isOK",
      "title": "Creates 'data.frame' from object of class 'dmdScheme_validation' for usage in 'details' of validation",
      "topics": [
        "valErr_isOK"
      ]
    },
    {
      "page": "valErr_TextErrCol",
      "title": "Colour the 'text' by using the error colour",
      "topics": [
        "valErr_TextErrCol"
      ]
    },
    {
      "page": "validate",
      "title": "Generic function to validate an object which represents a 'dmdScheme'",
      "topics": [
        "validate",
        "validate.character",
        "validate.dmdSchemeSet_raw"
      ]
    },
    {
      "page": "validateAllowedValues",
      "title": "Validate allowed values",
      "topics": [
        "validateAllowedValues"
      ]
    },
    {
      "page": "validateDataFileMetaDataDataFileExists",
      "title": "Validate suggested values",
      "topics": [
        "validateDataFileMetaDataDataFileExists"
      ]
    },
    {
      "page": "validateIDField",
      "title": "Validate id field",
      "topics": [
        "validateIDField"
      ]
    },
    {
      "page": "validateStructure",
      "title": "Validate structure of 'dmdScheme' object",
      "topics": [
        "validateStructure"
      ]
    },
    {
      "page": "validateSuggestedValues",
      "title": "Validate suggested values",
      "topics": [
        "validateSuggestedValues"
      ]
    },
    {
      "page": "validateTypes",
      "title": "Validate type of tab",
      "topics": [
        "validateTypes"
      ]
    },
    {
      "page": "write_excel",
      "title": "Write write x as an excel file to disk",
      "topics": [
        "write_excel"
      ]
    },
    {
      "page": "write_xml",
      "title": "Write write x as an XML file to disk",
      "topics": [
        "write_xml"
      ]
    }
  ],
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
    "cellranger",
    "cli",
    "cpp11",
    "crayon",
    "digest",
    "evaluate",
    "fastmap",
    "fontawesome",
    "fs",
    "glue",
    "highr",
    "hms",
    "htmltools",
    "jquerylib",
    "jsonlite",
    "knitr",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "R6",
    "rappdirs",
    "readxl",
    "rematch",
    "rlang",
    "rmarkdown",
    "sass",
    "stringi",
    "stringr",
    "tibble",
    "tinytex",
    "utf8",
    "vctrs",
    "writexl",
    "xfun",
    "xml2",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "Develop_and_Use_the_dmdScheme.Rmd",
      "filename": "Develop_and_Use_the_dmdScheme.html",
      "title": "Develop and use the dmdScheme",
      "author": "Rainer M Krug Rainer.Krug@uzh.ch",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Using the dmdScheme",
        "Select scheme",
        "Download new scheme",
        "knitr::include_graphics(\"./figs/Spreadsheet_03_Experiment.jpg\", auto_pdf = TRUE)",
        "knitr::include_graphics(\"./figs/Spreadsheet_08_DataFileMetadata.jpg\", auto_pdf = TRUE)",
        "Export uploaded spreadsheet to xml",
        "The R Package",
        "Installation",
        "Loading the package",
        "Managing installed schemes",
        "scheme_default()",
        "scheme_repo()",
        "scheme_list_in_repo()",
        "scheme_download()",
        "scheme_install()",
        "scheme_install_r_package()",
        "scheme_list()",
        "scheme_use()",
        "scheme_active()",
        "scheme_path_index_template()",
        "scheme_path_xlsx()",
        "scheme_path_xml()",
        "scheme_uninstall()",
        "scheme_installed()",
        "scheme_make()",
        "Entering new Metadata",
        "Importing Data from Excel Sheet",
        "Print dmdScheme Data",
        "Validating your metadata",
        "Converting Metadata to xml",
        "Re-import from xml into R",
        "Developing new dmdSchemes derived scheme definitions",
        "Create and edit new definition",
        "Minimum requirements for metadata schemes derived from dmdScheme",
        "Developing accompanying R packages",
        "Customize the index template",
        "Tokens which are replaced with values from a dmdScheme",
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